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three people work on a cylindrical marine sediment corer
Mara Fischer, Ben Harris and Tara Williams prepare a sediment corer for its journey to the bottom of the sea (Image: Shanti Mathias)

ScienceDecember 16, 2024

Carbon credits, fish poo and the push to discover the secrets of the sea floor

three people work on a cylindrical marine sediment corer
Mara Fischer, Ben Harris and Tara Williams prepare a sediment corer for its journey to the bottom of the sea (Image: Shanti Mathias)

Shanti Mathias spends a day in the Hauraki Gulf with a group of British scientists investigating the links between carbon and biodiversity in the seafloor mud.

The ocean swell is tilting the boat as the metal tube hovers above the water. “A-Frame out,” calls a marine scientist helping to operate the apparatus. On the back of the boat, researchers Tara Williams and Ben Harris lean out, unclipping the base of the tube from two stabilising ropes, the navy of Williams’ shark tattoo the same colour as the dark ocean. The skipper starts the winch, bright yellow rope unspooling as the sediment corer sinks to the bottom of the sea, then everyone works together to feed out the electric cable that powers the sediment corer. Each metre of cable, black and dense, weighs about a kilo. Finally, the cable and rope stop moving; the corer has reached the sea floor.

The corer gets switched on. Nearly a hundred metres below, the part of the device that my notes describe as “slicy thing” springs open, shudders through the soft mud, then seals up. Then the whole process happens again in reverse: heavy cable reeled hand over hand, the gawky corer spinning slightly as it comes out of the sea, the machine latched in place so Harris can slide the plastic tube out, khaki mud spurting all over his grey hoodie. 

a partially frozen sediment core on a dock
Paolo Cortelezzi unloads a partially frozen sediment core from the boat. It will be taken to the UK for analysis. (Image: Shanti Mathias)

We’re aboard the University of Auckland’s Te Kaihōpara research vessel, a few kilometres out from shore in the Hauraki Gulf. These scientists from the University of Exeter in the UK, (although the boat is operated by a skipper and fish expert/senior technician from the University of Auckland), have been in the area for a month as part of the Convex Seascape Survey, the logo of which is plastered around the boat and on the scientists’ clothing. The survey is a research effort dedicated to discovering how much carbon is stored in the soft sediments of continental shelves – and how much more could be if these areas are protected. The project is funded by the CEO of Convex Ltd., an insurance company. 

The partnership between Convex, the charity Blue Marine Foundation and Exeter is a glimpse of what it takes to make long-term, groundbreaking research happen. A year and a half into a five-year project, the plan is to sample soft sediments from the seafloor in a variety of locations while also analysing biodiversity big (fish) and small (worms living in the mud). So far, the team has been to Jersey, Scotland and Aotearoa; after this trip, they’ll have to figure out their next destination. 

The Hauraki Gulf is ideal to study, not just because of the resources of the University of Auckland’s Leigh Marine Lab, but also because of a cable protection zone. While it’s not obvious from the surface of the water, areas of the seafloor are protected from bottom trawling to avoid damaging extremely expensive undersea cables. This makes it possible to compare the biodiversity and carbon content between areas with and without bottom trawling. 

people working together to manage a winch while a journalist tries to stay out of the way
Paolo Cortelezzi, Paul Caiger and Tara Williams manage a winch pulling a research camera up from the seafloor (Image: Shanti Mathias)

“Blue carbon”, a term encapsulating how much CO2 is absorbed by marine ecosystems, is something of a buzzword at the moment. It’s now known that ecosystems at the edge of the water, like salt marshes and mangrove swamps, can absorb huge amounts of carbon relative to how much area they occupy. A group in the UK has just mapped the blue carbon of the British coast, while a NIWA project is quantifying how much carbon gets absorbed by kelp. With climate targets making measuring and storing carbon for offsets a big business, blue carbon has gained both research and commercial interest.

The reason that this part of the Hauraki Gulf is protected – not for the inherent value of biodiversity, but to protect human infrastructure – is an example of the warped logic underpinning carbon offsetting, says Ben Harris, who is leading the Convex Seascape Survey team in New Zealand and has the tan of someone who has been spending lots of time outside. “Even if you could perfectly calculate [the volume of carbon offset] the principle is just wrong. It’s mental; you’re just kicking the can down the road,” he says. But through human cynicism, the marine life he loves might be protected too. “If people jump on blue carbon because they’re like ‘oh great, we’ve got these carbon credits’ then biodiversity will slip in through the back door.”

Is he worried that his research can be used as a justification to keep emitting? “There’s this cynical kind of element which is that large organisations can benefit from offsetting their carbon – if they decide ‘we can put in, I don’t know, $50 million and protect this area for this many carbon credits’ they would say yes. The incentive is wrong, but you then end up with a massive biodiversity value.” 

While ecosystems right at the edge of the water have gained plenty of research interest, there’s much less information about the organisms that live further afield, in the continental shelf. Continental shelves, up to 200 metres deep, account for about 7% of the surface area of the oceans. The Zealandia continent that you may have heard about, stretching to the southwest and northeast of Aotearoa’s landmass, is a continental shelf. “We need numbers – to know the impact of trawling, to ground truth the models about how much carbon this ecosystem could absorb,” says Harris.

It’s not as simple as fish in = carbon stored, of course. I join Mara Fischer, an Exeter PhD student with curly hair tucked in a Convex Seascape Survey cap, on the top deck of Te Kaihōpara. She’s assembling BRUVS, Baited Remote Underwater Video Systems. Made of carbon fiber for lightness, the machines are simple four legged frames with slots for two GoPro cameras which are tilted and calibrated to help the researchers figure out how big the fish that swim past are.

Fischer’s PhD focuses on fish and carbon. “When the fish die, some of them will be eaten by other organisms – some of that carbon will end up in the atmosphere,” she explains as she sprays lanolin around the edges of the GoPro housing. At the sampling site, four BRUVS are dropped into the water, marked with a buoy (another ungainly process requiring lots of teamwork and hanging off the edge of the boat) and left for an hour.

Once the video footage is analysed, she’ll have data that can associate whether an area is protected, how much carbon is in the sediment and the size and variety of fish in the area. “The BRUVS are less invasive, the fish aren’t scared of them, they’ll come up to it to check out the smell,” she says, shaking a handful of chopped pilchard into a bait box with holes that is attached to the BRUVS. 

a blonde woman in a white tshirt crouches in front of a black frame which contains cameras that you can't really see but they are there.
Mara Fischer starts the BRUVS so the recording has information about the fieldwork site and date. (Image: Shanti Mathias)

Paolo Cortlezzi, a PhD student from the University of Western Australia who has been helping on the boat for a week, says he fell in love with the ocean as a child. Though he lived in inland Italy, he would visit his grandfather on the coast each summer. “I was snorkelling, I was getting the clams for making spaghetti,” he says, screwing a leg onto one of the BRUVS. 

After getting a Masters in shark conservation in South Africa (he’s wearing a t-shirt with diagrams of South African fish), his supervisor convinced him that there were enough people working on sharks already, so he took a sidestep to learn more about soft sediment systems. His supervisor is good friends with a researcher on the Convex Seascape project, which is how he’s ended up in Aotearoa helping out; he’s studying similar areas off the coast of Western Australia.

“The ocean is like a big forest,” he says. “On land you have trees and all the plants that absorb carbon dioxide, in the sea you have microalgae or phytoplankton, they accumulate organic carbon in their tissue, and it’s transferred along the food chain.” The carbon part is simple. “Fish are made of carbon,” he says. “Through their life they produce carbon through feces, and when it dies, it sinks to the seafloor.” Fish poo sinks quite fast, so not much of it gets eaten by other creatures, and more is sequestered. Fish bodies may sink slower, with organisms nibbling and digesting it, but eventually some of that carbon will remain in the mud, too. Fishing interrupts this process. “You’re not just pulling the fish out, you’re transferring the carbon from the ocean to your dinner place. And when it’s on your dinner plate, it will end up in the atmosphere.” 

a woman in blue shorts sits at the edge of the boat looking out over the edge of the water and guiding a yellow cable, while a man with two day stubble holds a monitor
Ben Harris guides an underwater vehicle while Tara Williams helps to manage the cable connecting it to the surface. (Image: Shanti Mathias)

On the boat, the question of how to quantify blue carbon could just be an academic one. There’s the rhythm of deploying different devices to encounter the seafloor, the arc of the wake of the boat, Fischer’s water-stained notebook an archive of what happens at each of the 14 sampling sites. But while the science might be methodical, what the scientists discover has political implications for the burgeoning game of carbon credits in a world where many of Earth’s “vital signs” are nearing record extremes

Soft sediment is often a “hard sell” to protect, in Harris’s experience. It’s easy to get people excited about coral reefs or waving forests of kelp, but mud, deeper underwater than most humans will ever go? Part of the problem is that there are lots of questions around how biodiverse these parts of the ocean were before mass bottom trawling. 

two people with blue caps and curly hair sort through a tray of shell fragments looking for worms
Cortelezzi and Fischer sort through sediment that has been sieved to get a sense of invertebrate diversity  (Image: Shanti Mathias)

In areas like the Hauraki Gulf, which have been trawled for decades, many people have grown up around an ocean that has already been heavily degraded. What might have lived in the sediment before heavy trawl lines flattened seamounts and pulled out any creature big enough to get jammed in the net? With trawling nets able to shift even big boulders, this can lead to less habitat, fewer nooks and crannies for living things to dwell in. “You could trawl somewhere and leave it alone for 40 years, but it’s 100 metres deep, and it could take a century to develop that regenerative ecosystem,” Harris says. “Then you go out and look at it like, it’s fine to [trawl here], there’s nothing really living anyway – but your whole baseline has shifted massively.”

Part of the Convex Seascape Survey is piecing together historical data, which the sediment cores will help with, to get a sense of what the silty area under the sea could have been like before industrial scale fishing. This is something New Zealand scientists are researching too. It’s estimated that more than two billion tonnes of carbon are in New Zealand’s seafloor, especially in Fiordland. However, given that these ecosystems were part of the carbon cycle before humans released huge amounts of additional carbon into the atmosphere, simply conserving these areas isn’t enough. “We should just be reducing emissions as much as we can,” Harris says. 

an overcast sky with a big ship and the bumps of little barrier island in the background. in the foreground of dark green-grey water the surface is disturbed with fish and lots of birds swooping down for kai
Birds gather above a group of fish under the surface of the water (Image: Shanti Mathias)

Human activity has already transformed the ocean, mostly for the worse. The water is contaminated; when Harris was doing his PhD in Wellington, looking at sea sponges in Wellington Harbour, he remembers colleagues finding kangaroo DNA in the water, thanks to kangaroo meat being used in dog food. He’s spotted microplastics in some of their samples, too, which might change the hydrocarbon readings. Biodiversity in the Hauraki Gulf is collapsing, snapper are starving, caulerpa is invading and mass death of fish, shellfish and seabirds will become more common thanks to climate change. Further marine heatwaves are expected this summer: from wriggling little nematodes to crabs scampering across the sediment to muscular kingfish, more heat will put vital species under further stress. 

Out on the rippling ocean, though, the bulk of Te Hauturu-o-Toi on the horizon, the reality of climate change doesn’t feel like only doom and catastrophe. Instead, there is work to do. Williams neatly labels scoops of mud for lab analysis then sits at the side of the boat to manage the cable for the underwater vehicle Harris is operating. Cortelezzi and Fischer plop small snails scooped out of obscurity on the seafloor into ethanol, so they can be identified later. Caiger, a fish expert, coils lengths of ropes neatly into buckets. 

three dolfins with bhite bellies clide under dark blue water with one of their fins poking out of the water
On the boat, pods of dolphins are a regular sighting, and a sign of why this ecosystem is worth protecting for more than just carbon. (Image: Shanti Mathias)

And then, in mid-afternoon, a flurry. A pod of around a hundred dolphins ripple through the water, their tummies striped yellow and white, smaller babies propelling themselves next to their mothers, their chirping chatter audible even above the water. The sea ahead is rippled, a big group of fish clustered under the water. Matte sooty shearwaters flap hopefully on the surface; gannets drop like needles towards their prey. Far below is the soft silt of the sea floor, where all these fish will go one day if they don’t get caught or eaten. In the dolphins and birds, fish and crabs, all the micro-organisms that most of us will never see, the systems of carbon and life are utterly interconnected. Humans just need to find the right reason to protect them.

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a pair of white couble doors flung open to reveal an orange microscope and lots of New Zealand 50 dollar notes
Image: The Spinoff

ScienceDecember 5, 2024

The changes to research funding in Aotearoa, explained

a pair of white couble doors flung open to reveal an orange microscope and lots of New Zealand 50 dollar notes
Image: The Spinoff

The government has eliminated Marsden grants for humanities and social sciences. Shanti Mathias explains what Marsden grants are, and why the change has worried so many researchers. 

OK, so what’s the Marsden Fund? 

The Marsden Fund was established in the 1990s to provide contestable government funding for research in New Zealand. The funding comes from the Ministry of Business, Innovation and Employment, and is administered by the Royal Society Te Apārangi. In 2024, the total pool was $77.7 million, divided into 113 grants for different projects. Researchers apply for the funding, and a council appointed by the science minister goes through the proposals. Ten different panels of experts in different areas (i.e. social sciences, humanities, physics and chemistry, biomedical science) go through the proposals and decide which ones they want to pick. While there are a few different types of grants, all Marsden-funded projects are distributed over three years, and pay for salaries, research materials, institutional costs and students and postdoctoral positions associated with the project, giving researchers time to thoroughly investigate an issue. 

What sort of research are we talking about?

Marsden Fund grants are for “blue skies” research, which means research without a single clear outcome or economic benefit; the expectation is that an increased amount of possibilities and knowledge can have impacts that researchers can’t always directly see. Any research into the fields of science, engineering, mathematics, the social sciences and the humanities has been eligible – until now.

Oh?

Yesterday, Judith Collins, the minister of science, innovation and technology, announced major changes to the Marsden Fund that will apply from 2025. These changes  mean that at least 50% of the money has to go to projects that have economic benefits to New Zealand. The panels that made decisions for humanities and social sciences are being disbanded, as funding will no longer be directed to these areas. “Real impact on our economy will come from areas such as physics, chemistry, maths, engineering and biomedical sciences. The Marsden Fund will continue to support excellent researchers in New Zealand, who are looking to create a better country for us all,” Collins said in a press release.

a white woman in her early 60s with blonde hair, standing at a podium talking with a graph in her hands
Judith Collins at a Parliament press conference, August 31 2021 (Photo: Mark Mitchell – Pool/Getty Images)

Why isn’t the government funding the humanities any more?

Collins’ explanation is economic: “The government has been clear in its mandate to rebuild our economy. We are focused on a system that supports growth, and a science sector that drives high-tech, high-productivity, high-value businesses and jobs,” she said in the same press release.

How has this change been received?

In the research community, not well. It’s been described as “very concerning” (Universities New Zealand), a “significant step backwards” (University of Otago), and “chilling” (Troy Baisden, co-president of the NZ Association of Scientists). 

clock tower of old stone gothic building in dunedin on a sunny day
At the University of Otago in 2022 (Image: Aiman Amerul Muner)

What about outside the academic world?

The Act Party welcomed the move, saying in a press release that in the past funding had been “prioritised for spirituality, activism and identity politics over high-quality public good research that benefits all New Zealanders”.

Business lobby group BusinessNZ was also supportive, putting out a press release that said “Directing the Marsden Fund to focus more narrowly on research that will help to support high-tech, high-productivity, high-value businesses and jobs is the right move.”

And is it proven that humanities and social science research doesn’t contribute to the economy? 

It’s long been true in scientific research that it’s often easier to get funding for “hard science” like physics, engineering and biomedical health than humanities research, like history, languages and sociology. A scroll through some of the 2024 grants shows the range of humanities topics; a project to understand “the historical drivers and possible futures of global cultural and linguistic diversity”, research “examining which syllables are stressed in te reo Māori and why”, research into a Te Tiriti-affirming tax system design, and studying how people think about waste in a circular economy. It’s impossible to compare whether this research is of more or less value than studying the gut biomes of alpine insects, “how plants hear the contrasting vibrations of a bee buzzing and a caterpillar chewing”, looking at the environmental risks of forever chemicals or tracking cosmic-ray particles. 

Many scientists and research professionals say that different disciplines learn from each other, and that a healthy research system has many parts. “The work that our colleagues in the humanities and social sciences do is incredibly important. We can do all the work in developing clean technologies we want, but if we don’t understand the barriers to people purchasing that tech? It becomes useless,” said Nicola Gaston, co-director of the MacDiarmid Institute for Advanced Materials and Nanotechnology, who described herself as “absolutely disgusted” by how physical science was being “weaponised” against the humanities. 

“Forcing economic benefits into the Marsden fund doesn’t get us a two-for-one. Instead, it is likely to erode the excellence, quality and efficiency of both,” said Troy Baisden, co-president of the New Zealand Association of Scientists, in a comment to the Science Media Centre. 

a pink haired white woman wearing a lab coat and gloves, putting something in a bottle with a pippette
Microbiologist Siouxsie Wiles.

“It is naïve to think that we can tackle the current and future challenges we face as a country and a world without our humanities and social science scholars and their research,” said Siouxsie Wiles, a microbiologist and associate professor at the University of Auckland. 

“Humanities and social sciences are the disciplines that underpin our society and research in these areas is crucial for understanding society transformation,” said Universities New Zealand in a press release. “In a time of societal upheaval, not only in Aotearoa New Zealand but worldwide, government disinvestment in these disciplines is astonishing.”

Describing the process of applications in a piece for The Spinoff, former Marsden Council chair Juliet Gerrard said: “Each year, it was impossible to know which of the chosen ideas would fly the highest, but the process, inevitably imperfect, produced a suite of research that did us proud… No one knows which ideas will be needed to face future challenges and seize opportunities. But a community of researchers across all disciplines pursuing their best ideas is our best insurance for making sure we have access to those ideas when we need them.”

In a joint letter, a number of professional associations representing fields in the humanities and social sciences called on Collins to “reverse the devastating decision to stop supporting our research”. Suggesting only “areas such as physics, chemistry, maths, engineering and biomedical sciences” made a “real impact” on the economy was “a dangerously narrow and impoverished view”, said the letter. “As many scientists have pointed out, scientific research and innovation depend on critical interventions from humanities and social science scholars.”

Have there been changes to any other research funding?

The Catalyst Fund, a government investment in research and innovation that creates international relationships and impacts New Zealand’s economy, environment and society has been updated too, to “deliver greater economic impact for New Zealand,” Collins said. The new plan “focuses our funding on clear growth areas of quantum technology, health, biotechnology, artificial intelligence, space and Antarctic research,” Collins said in a press release yesterday. Catalyst Funds distribute $20m-$30m each year. 

“International collaboration is most effective around fundamental research in areas of mutual excellence and interest. Attempting to extract economic outcomes undermines the quality of collaborations as well as their long-term benefits,” said Baiden, of the Catalyst fund changes.